rs236975444 SNP Detail

Summary

• ID
  rs236975444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAGGTG GATTTGCAGC
  AGGGAGGGTG TGGTCTGAGT GGAGAGACCA CCTCCTACCA CCCTTCAGTG TCCAGAGAAC
  TCAGCCAGCC CTGGGAGCCC TCCTGCACCC CTTCATCTAA GAAGGGAGTG GAAGACCCCA
  GGGAGAAGCC ACAGGACATT CTTCATGGTG GGCTCTGTTG GGACAAGTCT CATAGACAGC
  Y
  CTAAGCTCTC CTGTATTCCC ACTACAAAGG CTGAGAGATC AGTTCTTCAA TTACCAGTCT
  CCTCTGGAGC TAAGAGTGGA GGGTCTCTTC CTGCCTAAGG TGCCCCGCCC ATGGTGCCAT
  GCCGCCCAGT AAATAAAGCC CCATCTGAAT AACGGATTGA AAAACTTACC GAGAGTTGCT
  GAAGAAGTCA GAGTTGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187848	MGP_WTSI_7_53176442	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236975444					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187848	MGP_WTSI_7_53176442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1894 bp proximal
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1068 bp downstream
Rr368318	regulatory region 368318	1684 bp upstream
Rr368319	regulatory region 368319	1904 bp upstream
Rr400324	regulatory region 400324	118 bp upstream
Rr646608	regulatory region 646608	1597 bp distal
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	979 bp proximal
Tssr2257	transcription start site region 2257	1768 bp downstream
Tssr72489	transcription start site region 72489	1713 bp upstream
Tssr72490	transcription start site region 72490	879 bp upstream
Tssr72491	transcription start site region 72491	651 bp upstream
Tssr72492	transcription start site region 72492	436 bp upstream
Tssr72493	transcription start site region 72493	404 bp upstream
Tssr72494	transcription start site region 72494	394 bp upstream
Tssr72495	transcription start site region 72495	378 bp upstream
Tssr72496	transcription start site region 72496	292 bp upstream
Tssr72497	transcription start site region 72497	189 bp upstream
Tssr72498	transcription start site region 72498	39 bp downstream
Tssr72499	transcription start site region 72499	189 bp downstream
Tssr72500	transcription start site region 72500	346 bp downstream