rs236978239 SNP Detail

Summary

• ID
  rs236978239
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70569829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGAAAT GGTGCTGGGA
  GAATGGAATT AATCAAAATA AGACGAACGG CCCACAGTCT ATCACAGGTG GCAGCTTGAT
  TAATGAAAAG CCAGAAATCA GCTCATATAA TTTGGGAAAT CAACGAGAGA AAGGAAAAAG
  AAAAAAAAAA AAACAGCAAA ACAACCAGAA ATGTCTAGCT TTTCGGGGGG GGGGGGGGGG
  K
  GTCCTTTGTG TTTCTTTGGG CCTTTGACCT GGCGATGTCA CAGACCTTCA CAAGCAATTT
  CTGTTCCTCC TGTTCCTGCT GTCGGGAAAT CAATAGAGGT ATTAAAGGAC GCTTCCCTGC
  GGGGCTAACC GGAAATGGGA GCAAAGAAAG GAAGCTTCCC TGCGGGCTAA CCGGAAATGG
  GAACAAAGAA ACGAGCCTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380818368	MGP_WTSI_10_70196747	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236978239					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380818368	MGP_WTSI_10_70196747	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70569829 () rs orientation: forward

Symbol	Name	Function Class
Gm33979	predicted gene, 33979	within coordinates
Rr220222	regulatory region 220222	229 bp distal
Rr384898	regulatory region 384898	within coordinates