rs236983366 SNP Detail

Summary

• ID
  rs236983366
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178056796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGTGGGG GCGGGACAGA
  GCCCAGCCAA GGTTGGCCTG GCGCGAGCTG GCCCTGGGAC TGTGGTGAGC GGCCAGCCAG
  CCAGCTCTGG CCACCTTTCT CCAGCAACCT GGATCAGTGG CCAGACCCAG AAAAGGTTGC
  TTCTGCGGGA AGCATCTTGC CCACACCTCC CCACCATGCT GTGCCTCCCC ATTGGCCAGG
  A
  AGCCAGTTCC CTGGGGAGGT GCGGGGGGGG GGGAGGGGGG CGGGGGAAGA TGCTGCTTCC
  CTTAGCTGGG CTTGCAGCCA GAGAGGAAGA CTGGGAAAGG GGCTAATGCC CATGATGGAT
  TGTGCAGCTG CCCTCTGGCT CTTGAGGAGC GTTTTGTAGC CAGAATCTCT TGAGCTTTAG
  TTTTGCTGCT ATGCAAGCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356710486	MGP_WTSI_2_178149708	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236983366					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356710486	MGP_WTSI_2_178149708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178056796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12875	CpG island 12875	within coordinates
Fam217b	family with sequence similarity 217, member B	within coordinates
Ppp1r3d	protein phosphatase 1, regulatory subunit 3D	540 bp upstream
Rr41407	regulatory region 41407	1005 bp proximal
Rr56270	regulatory region 56270	within coordinates
Tssr796	transcription start site region 796	58 bp upstream
Tssr797	transcription start site region 797	1614 bp downstream
Tssr22178	transcription start site region 22178	412 bp downstream
Tssr28060	transcription start site region 28060	557 bp upstream
Tssr28061	transcription start site region 28061	496 bp upstream
Tssr28062	transcription start site region 28062	1601 bp downstream
Tssr28063	transcription start site region 28063	1626 bp downstream