rs236986399 SNP Detail

Summary

• ID
  rs236986399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81819443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTCCC CAGAAAAGCA
  GCGTAACTAC TGCGCACTGG TTTGTTTGAT TTGTTTTGTT TTTAGGACAC TGGGGTCTTC
  TCATAGAGTC TAGGCTGACC TCAAATTCAC AGCAATCTTT GGCCTCTTCG GTGCTGGGAT
  CACAGGTCTA CCCCCATCAT GTCTAATTTT CTTTCTAATT GTTGAAAATT GCCTACTTAT
  M
  TTTATTTCAT GTTTCACTGG TGTGTTGCCT GAATTTATAT CTGTGTGAGA GTGCTAGATT
  CCCTGGAACT GGAGTTACAG ACAGTTGGGG GGTCGCCATG TGGGTGCTAG GAATTGAACC
  TGGGCCCTCT GGAAGAGCAG CCAGTGCTCT TAATCATTGA GTCATCTCTC CAGCTCCTGT
  CATGTCTGTT TTCCTGTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394729720	MGP_WTSI_15_81765672	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236986399					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394729720	MGP_WTSI_15_81765672	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81819443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7402	CpG island 7402	1632 bp proximal
Csdc2	cold shock domain containing C2, RNA binding	1517 bp upstream
Gm62067	predicted gene, 62067	within coordinates
Rr506348	regulatory region 506348	1886 bp distal
Rr506349	regulatory region 506349	833 bp distal
Rr506350	regulatory region 506350	1039 bp proximal
Rr506351	regulatory region 506351	1456 bp proximal
Rr506352	regulatory region 506352	1528 bp proximal
Tssr132315	transcription start site region 132315	1511 bp upstream
Tssr132316	transcription start site region 132316	1604 bp upstream
Tssr132317	transcription start site region 132317	1638 bp upstream
Tssr132318	transcription start site region 132318	1669 bp upstream
Tssr135513	transcription start site region 135513	1453 bp downstream