rs236991971 SNP Detail

Summary

• ID
  rs236991971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54798735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGGTGG CATCCAACAG
  TTCATTCTTT TTGGTTGTTT ATTTTCTCAT AACAGGGTTT CTGGGTAGCC CTGGCTGTCC
  TCAGACTTGC TCTGTGGACC AAGATGGCCT CAAACTCAGG TCTGCTTGCC TCCTAAATGC
  TGAGATCAAA GGTGTGCGCC ACCACTGCCC AGCTCAACAG TCCATTCTCA AGCAAATGTT
  M
  AAGGCAGACT AGCTCAGCCC TGCTCTTAAC TCAGTATCCA TCCAGGAAAG GGCACCTAGG
  GTCAGGGTGT ATAAACGAGG CTGGCAATGG CTTAACCCGG TATCTGACTG GAACCATGTC
  TCCTTAATGT CTCTATCCTG TCTTTTCTTC TCAGTGAGGG CAAACAGAAG CCTAAGGGCC
  AAAGCCTGAT GGCCCAAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428876	MGP_WTSI_11_54721411	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236991971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428876	MGP_WTSI_11_54721411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54798735 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1732 bp downstream
Tssr101551	transcription start site region 101551	1644 bp downstream
Tssr101552	transcription start site region 101552	1581 bp downstream
Tssr101553	transcription start site region 101553	1128 bp downstream
Tssr101554	transcription start site region 101554	1116 bp downstream
Tssr101555	transcription start site region 101555	1074 bp downstream
Tssr101556	transcription start site region 101556	779 bp downstream
Tssr101557	transcription start site region 101557	749 bp downstream
Tssr101558	transcription start site region 101558	732 bp downstream
Tssr101559	transcription start site region 101559	709 bp downstream
Tssr101560	transcription start site region 101560	663 bp downstream
Tssr101561	transcription start site region 101561	626 bp upstream
Tssr101562	transcription start site region 101562	650 bp upstream
Tssr101563	transcription start site region 101563	700 bp upstream
Tssr101564	transcription start site region 101564	714 bp upstream
Tssr101565	transcription start site region 101565	1143 bp upstream
Tssr101566	transcription start site region 101566	1193 bp upstream
Tssr101567	transcription start site region 101567	1554 bp upstream
Tssr101568	transcription start site region 101568	1630 bp upstream
Tssr101569	transcription start site region 101569	1713 bp upstream
Tssr101570	transcription start site region 101570	1735 bp upstream
Tssr101571	transcription start site region 101571	1789 bp upstream
Tssr101572	transcription start site region 101572	1884 bp upstream
Tssr101573	transcription start site region 101573	1921 bp upstream
Tssr101574	transcription start site region 101574	1935 bp upstream
Tssr101575	transcription start site region 101575	1983 bp upstream
Tssr101576	transcription start site region 101576	1997 bp upstream
Tssr108006	transcription start site region 108006	624 bp upstream
Tssr108007	transcription start site region 108007	655 bp downstream
Tssr108008	transcription start site region 108008	715 bp downstream
Tssr108009	transcription start site region 108009	731 bp downstream
Tssr108010	transcription start site region 108010	1152 bp downstream
Tssr108011	transcription start site region 108011	1748 bp downstream
Tssr108012	transcription start site region 108012	1782 bp downstream
Tssr108013	transcription start site region 108013	1876 bp downstream
Tssr108014	transcription start site region 108014	1883 bp downstream
Tssr108015	transcription start site region 108015	1966 bp downstream