rs236993962 SNP Detail

Summary

• ID
  rs236993962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6354682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCAGCA TTGCCAAGCC
  ATGTGTCGCT CCACTTTCTC CACTGACCAG GGTTACAGTA CCAGGCACGA AATTCATTGT
  TGTAGAGCAG GCCTCAAGTC CTAAATATAT AAATACATAG ATAAACAGAT CAATCAGTCA
  ATCAATCAAT CAGTCAGTCA GTCAAGCAGT TTGGTGCTCT GGGACTGTAG TGCCACCACC
  R
  CAGCGGAGGG CACATCTTAC CTGGAGGTGA GGGTTGAGCA GGCAGAGAGC TGGGTAAGAC
  CACATGTACA GTTCTCAATA CATGATGAAC TTTGTCAGCA CAAAGGTGTT TCCCTCTGTT
  AAAAGAAATA TAGTAAAATA GTAGATTATA TTTACTGTAA AAATAGAACA AAACGAGGTA
  CTCAACATGT GTCGGTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320210756	CHEV_2_6270917	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236993962					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6354682 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr551374	regulatory region 551374			147 bp distal
Rr551375	regulatory region 551375			187 bp proximal
Rr551376	regulatory region 551376			1637 bp proximal
Usp6nl	USP6 N-terminal like			Intron
				Noncoding-Transcript-Variant