rs236999274 SNP Detail

Summary

• ID
  rs236999274
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5644228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGAG TGCGGGTGCG
  GAGGGGGTGG GGCGGGAAGG TAGGCTGGGG GCGGGGCGCT CTGGGGGCGT GCCGGCTGCG
  CAGAGACACG CGCTCTGGGC CGCAGCAACT GGCTCCAAGT TCCCTCCCTC GCTCTCCTGC
  GGAGCCTGCC TGAGCCCGCC CCTTCGGTGC GGAGGAGCAA ACGCGGCCCC GGTCAGCTCA
  K
  CCCTCCGTTG CCGCCCGATC CGGGCCGGTT CGGCTAACCC GGTCCATTCC GAGCCGGCGG
  CGAGGACCCG GCGGCCACTT CATCCCGGCC TGCAGTGCAT CGCCGGGCCC AAGCTCCTCC
  TCGCGGTCTC CCGAGCCTGG TGCCTGGCCT GGCCGCCTTG CAGGGGCCGG AGTGCGGCCA
  AGGTAAACGG GGGCGCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360465122	MGP_WTSI_4_5571375	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236999274					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360465122	MGP_WTSI_4_5571375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5644228 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	1944 bp downstream
Cpgi13998	CpG island 13998	within coordinates
Fam110b	family with sequence similarity 110, member B	within coordinates
Rr588322	regulatory region 588322	97 bp distal
Rr588323	regulatory region 588323	within coordinates
Rr588324	regulatory region 588324	110 bp proximal
Rr588325	regulatory region 588325	1834 bp proximal
Tssr36378	transcription start site region 36378	99 bp downstream
Tssr36379	transcription start site region 36379	17 bp downstream
Tssr36380	transcription start site region 36380	within coordinates
Tssr36381	transcription start site region 36381	40 bp upstream