rs237001299 SNP Detail

Summary

• ID
  rs237001299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65756491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCAGTC TCCCCCAGCC
  CAGCGCCGGA CGGCTCCTGA ATTCTGAACA GTTGGCAGCC TGGTCATACC CCTCACTGCT
  TGTGCAGATG GGCCCTGGCA GCTTGCAGCC CAGTGCAGGC CCGGGAGCCA CAGAAGCAGG
  CCTTCCCGAC ATTGCCATCC TGGGGGTGGT ATCTGGATCT TCGGCCTATT TTCTTTGAGT
  Y
  TTTGAATTTT ATCCTGGCAT TGGATCACCT TCCAGAACGG CACAGGCATG GGATCAAGTT
  AAGCGCAGGT TTCCCTGTCT GTGAGATGAC CCACTATAGA TGTTGGTTGT TCATTGGAGA
  GATGTAGAAG ACAGGAAACC AGAGCGCTCC AAATCTTAAG TTATAACTTT AGAACATGGT
  GGCTTGAGCT ATTGTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809799	CHEV_6_65729501	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237001299					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65756491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	36 bp distal
Gm16838	predicted gene, 16838	258 bp upstream
Prdm5	PR domain containing 5	within coordinates
Tssr56854	transcription start site region 56854	445 bp downstream
Tssr61222	transcription start site region 61222	129 bp downstream
Tssr61223	transcription start site region 61223	182 bp downstream
Tssr61224	transcription start site region 61224	190 bp downstream
Tssr61225	transcription start site region 61225	207 bp downstream
Tssr61226	transcription start site region 61226	266 bp downstream