rs237003963 SNP Detail

Summary

• ID
  rs237003963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101677423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTAAC CAAACAGTAC
  TTCTGAGAAA GAAAAGGTGC ATGCAATCTC TTCCAGCCTG TAGGAGTCAG AGAAGGGACA
  AAAACCTTAA CCCCCTGGCA CCTGAACTGG GCTCTTTCTG CCACACAAAC TCCTCCCCTT
  TACCTACCAA ACTGTTCTTT AAAGTTTGAA CCTGCTGCCG CTCTCCTCTA GGGACCCCCC
  Y
  TTTCATGAGA GCCTGGGTCA GTCCATATAT ATGGTGAGGT ATCTTTCATT CTCTTCCCTG
  TTAGAGAAAT CCCTATATAG TTATGGGGAT CTCTGCGGGG GCCCAGAGGA GGACTCCTTC
  CTTGAGCCTC GCTCGCACTC AAGAGTTGCA CAAAATGCCT GTCAGGTGAA CAGCTACAAT
  AAAAAGCTAA GTAATGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487382	MGP_WTSI_11_101647911	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237003963					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487382	MGP_WTSI_11_101647911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101677423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	789 bp distal
Etv4	ets variant 4	1226 bp upstream
Gm39392	predicted gene, 39392	492 bp upstream
Gm71843	predicted gene, 71843	within coordinates
Rr386582	regulatory region 386582	within coordinates
Rr402993	regulatory region 402993	1023 bp downstream
Rr457077	regulatory region 457077	1619 bp distal
Rr457078	regulatory region 457078	736 bp distal
Rr457079	regulatory region 457079	150 bp proximal
Tssr105162	transcription start site region 105162	1131 bp upstream
Tssr105163	transcription start site region 105163	1167 bp upstream
Tssr110967	transcription start site region 110967	1960 bp upstream
Tssr110968	transcription start site region 110968	1922 bp upstream
Tssr110969	transcription start site region 110969	1764 bp upstream
Tssr110970	transcription start site region 110970	1741 bp upstream
Tssr110971	transcription start site region 110971	1415 bp upstream
Tssr110972	transcription start site region 110972	1377 bp upstream
Tssr110973	transcription start site region 110973	1356 bp upstream
Tssr110974	transcription start site region 110974	1308 bp upstream