rs237006890 SNP Detail

Summary

• ID
  rs237006890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117692239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCTCTA GCGGCGCTAC
  TGCAAAGGGA ACGGAATTTG CTCTTGACGT CTCTCTAGGG GGAACGCAGG CGCAGAAGGC
  CAGGGGCCTG GCGGGCTAAC TGCAGCCCCA GCCCCCCAAA GCGCCCCAGG CCTTTTGGCT
  TCGTTCCAAG CCTAGCCCGA AGGGGAGGAC ATCTGCTTCC TCCAAGTGTC CCAACTGAAG
  R
  GCAGAGAGGC GAAGGAGAAG GGGACTCCTT TGCCGAGCCC CACTCCCAGG GGTTCGTGAG
  GATCAATCAT CAGAAAACTA GAGCCACTTG TAATCTTATT CCCTGGTAGG AGGAGTCTGA
  GTAGTCGGCA CGCGGGAGGG AGGAGATGGG ACCAGGGCGG GGGAGGGCGG CCAGGGGAGC
  CGCTCAGGGA GGGGAGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362978358	MGP_WTSI_4_117507647	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237006890					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362978358	MGP_WTSI_4_117507647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117692239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	216 bp proximal
Gm17114	predicted gene 17114	257 bp downstream
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1 bp upstream
Tssr38631	transcription start site region 38631	193 bp upstream
Tssr38632	transcription start site region 38632	236 bp upstream
Tssr38633	transcription start site region 38633	262 bp upstream
Tssr38634	transcription start site region 38634	296 bp upstream
Tssr38635	transcription start site region 38635	345 bp upstream
Tssr42994	transcription start site region 42994	803 bp downstream