rs237018573 SNP Detail

Summary

• ID
  rs237018573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162542855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTAAAAAG CTCCATTTCC CAAATCTCTA
  ATGCTGTTTG CCAATAAGCT TTTAGGGAAT AACAAATAAT GAATAAATAA ATAAAACAAG
  ATCCTGAAGC AATTAAGTAA GCTAAGAAAA ATAAAGAAAA TCTGTAGTaa aaaaaaaaaa
  M
  aaaacaaaaa aaacaaaaaC CGTATGAATG AAGCATCTTT GTACCAACAG CTCATGTTCT
  ATCAACAAAG TCACGCTATC AATAGCAAGA CTGTCACAAA TTTACCTGCT GCTCTCTTTA
  GGACTAGTAC TTCCTTGCTC ATCATCATCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320083517	CHEV_1_164645417	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237018573					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162542855 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr14649	transcription start site region 14649	1926 bp upstream
Tssr14650	transcription start site region 14650	902 bp upstream
Tssr14651	transcription start site region 14651	170 bp downstream
Tssr14652	transcription start site region 14652	408 bp downstream