rs237023242 SNP Detail

Summary

• ID
  rs237023242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89361491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGCATG AAACCGAGGC
  TTAGAATAAA ACTCAAAGCC ACAACCAAAG CTGTTCCTGT CCTCTTACAG GACAGGCTGG
  GAGTGACCCA TTTAAAGACA AGTAGATAAA GATGATATGT TGACAGTTTC CCAAACACAT
  CCAAGCCTCA GTTTCCCCCT GTGGGCAATT GATCCTTTTG CTAAGCTCCT TGGTTTTTTG
  K
  TTTTTTAGTT TTTTGAGACA GAGTTTCTCT GTATAGCCCT GGCTGTCCTG GAACTCACTC
  TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCTGCCTGCC TCTGCCTCCC AAGTGCTGGG
  ATCAAAGGCC TGCGCCACTA CGCCCAGCTG CTAAGCTCCT TGGGGACAGA GGGTTCTGAG
  GGCTGCCTTA TCACTCCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss375494067	MGP_WTSI_8_91158762	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	G	G	G	T	T	T	T	T	T	T	T	T	G	T	G	T	G	G	T	T	G	T	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs237023242					SNP	G	T	T	G	G	G	T	T	T	T	T	T	T	T	T	G	T	G	T	G	G	T	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375494067	MGP_WTSI_8_91158762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89361491 () rs orientation: forward

Symbol	Name	Function Class
Rr178502	regulatory region 178502	1691 bp distal
Rr187078	regulatory region 187078	within coordinates
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	within coordinates
Tssr82357	transcription start site region 82357	1113 bp downstream
Tssr82358	transcription start site region 82358	1196 bp downstream
Tssr82359	transcription start site region 82359	1254 bp downstream
Tssr82360	transcription start site region 82360	1289 bp downstream