rs237023596 SNP Detail

Summary

• ID
  rs237023596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180214371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCTTAG GGCAGAGGGC
  CGTGTCAGCT GGGACTGTGG GTCCCAGAAA AGAGACAGAG GTTGGGGGGG GGCTGCAGCA
  GTGTGTGGGG GCTGTGTGCC CCAAGTACTG TTTTCTGATG TATCACTGAA TTTTACATAG
  TGAGAGGAGG CAAGCTGAGC AAGGTGTTAA GGTAAATGTC CACACAAGTG ATACAGGTTG
  R
  CCCCCCAACC ACCACCCCTC CCGCCCCCCC CCTGTTTTCC CTCTCCCCCC CCCCCCCGGC
  TCAAGTGGAG GTTCCAGCGA TTCTAAAGGA GCTGGCAAAC ACAGGGACAG GGACTTGGCC
  TCAAATGCTG ACCACTTGTT CATCTGGGGG ACCCTTTCTC ACAAGGCTTG AGCGCCCTGA
  TCGGGATGGA GGTGTCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352585200	MGP_WTSI_1_182316937	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237023596					SNP	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352585200	MGP_WTSI_1_182316937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180214371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1108	CpG island 1108	661 bp proximal
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr396657	regulatory region 396657	607 bp upstream
Rr424483	regulatory region 424483	1849 bp distal
Rr424484	regulatory region 424484	1603 bp distal
Rr424485	regulatory region 424485	1170 bp distal
Rr424486	regulatory region 424486	55 bp proximal
Tssr10464	transcription start site region 10464	936 bp upstream
Tssr10465	transcription start site region 10465	1193 bp upstream
Tssr15537	transcription start site region 15537	670 bp downstream