rs237034321 SNP Detail

Summary

• ID
  rs237034321
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCAACAA GGAAAGCCTC AGAGAGACCA
  CATTTCTTGG GGACACCACT GTTCTAGGAC ACTTTGGGAT CTCTGGCTTA AGCTGTGAGC
  GCTAACCCCA GCGGGTGAGC AGCTCTAGGC TGTATGATGT TTACCCGTTT GAGAAAATCC
  M
  CTCGGCTCCG GTGCCCCTCC TCATGTGATT AAGTTGGGAA CAGGAAGAGA GGAGTCTCAG
  GCTGATAACA GCTGAGAACA TGGCCTTTTG CTGAGAAAAA TCTGGGTTGG AGTGGCACAC
  CAGTGGGACT GGTCGAGAGC AGCACTCGGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320472573	CHEV_2_118729193	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237034321					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733938 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	314 bp distal
Rr397220	regulatory region 397220	1953 bp downstream
Rr563367	regulatory region 563367	1994 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1814 bp distal
Rr563372	regulatory region 563372	1356 bp distal
Rr563373	regulatory region 563373	904 bp distal
Rr563374	regulatory region 563374	411 bp distal
Rr563375	regulatory region 563375	1994 bp proximal
Tssr19589	transcription start site region 19589	1969 bp downstream
Tssr19590	transcription start site region 19590	1840 bp downstream
Tssr19591	transcription start site region 19591	1794 bp downstream