rs237053927 SNP Detail

Summary

• ID
  rs237053927
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGTATGC TAGCCAGGCC TGTTAGAAAT
  AAAGTTTATG ATGCCTAAGA TGTTAATGTT GGTTCACCAG TATTGACCAG CCATTAGATA
  CGGTAGAATA CTTCTCTTAA CAGGCAGCTC AAGGGAATAG TATAGGGTCA CAAGCAATGT
  W
  AAGTCCTGAT CTACAATAAA GCCCAGTTCT TTTCTTGAGA GAAACATAAT TCTGCCAAAT
  GGGTAAGATG ACCCCAGGTA ACAACTATTT GAAAAAGTAC AACACTGGTG CACTTAAAAT
  AATTCTGGCA ATAACTGATG CCTAAATGAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727219	CHEV_1_55085008	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237053927					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	419 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411123	regulatory region 411123	1100 bp distal
Rr411124	regulatory region 411124	694 bp distal
Rr411125	regulatory region 411125	647 bp distal
Rr411126	regulatory region 411126	within coordinates
Rr411127	regulatory region 411127	678 bp proximal
Sf3b1	splicing factor 3b, subunit 1	683 bp upstream
Tssr6707	transcription start site region 6707	1788 bp downstream
Tssr6708	transcription start site region 6708	564 bp downstream
Tssr11708	transcription start site region 11708	758 bp upstream
Tssr11709	transcription start site region 11709	680 bp upstream