rs237056994 SNP Detail

Summary

• ID
  rs237056994
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TCTTGAAAAA CCAAAAAAAA
  A
  AAAAAAATAA AAAAAATAAA TAAAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss366325778	MGP_WTSI_5_114579963	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs237056994					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325778	MGP_WTSI_5_114579963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268015 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1736 bp upstream
Cpgi16309	CpG island 16309	1556 bp distal
Cpgi16310	CpG island 16310	238 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1207 bp downstream
Rr617827	regulatory region 617827	1411 bp distal
Rr617828	regulatory region 617828	1679 bp distal
Rr617829	regulatory region 617829	53 bp proximal
Rr617830	regulatory region 617830	750 bp proximal
Rr617831	regulatory region 617831	1549 bp proximal
Tssr48056	transcription start site region 48056	410 bp upstream
Tssr48057	transcription start site region 48057	434 bp upstream
Tssr48058	transcription start site region 48058	1203 bp upstream
Tssr48059	transcription start site region 48059	1230 bp upstream
Tssr52694	transcription start site region 52694	1735 bp upstream
Tssr52695	transcription start site region 52695	751 bp downstream
Tssr52696	transcription start site region 52696	1632 bp downstream
Ung	uracil DNA glycosylase	432 bp upstream