rs237061195 SNP Detail

Summary

• ID
  rs237061195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92112901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTGGA GTGTCTGAAG
  ACAGCTACAG TGTACTTACA TATAATTAAA AAAAAATTTA AATAAAAGCC ATATGTATGA
  AGAATGATTG GCAGAAAAAT CTAGATATTA AAACTGAGCT ATGAGGCCAA CAGAATGTCT
  TAGCAGGTAA AGGTAGTTAT CACAAAGCCT AATATATGTA TGTATATATA TATATATATA
  Y
  ATACACATAC ACACACATAT ATAGCTTTAA AATATATTCT TACTGTTTTG TAGATTCCCC
  ACAGATGAAA ACATCAAAAG AAAGTGGGTA TTAGCCATGA AAAGACTAGA TGTGAATACT
  GCAAGCATTT GGAAGCCTAA AAAAAGGAGA TGTGCTGTGT TCAAGACACT TCAAGAAGAC
  AGACTTTGAC AGAAGCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss365873187	MGP_WTSI_5_92394068	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs237061195					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365873187	MGP_WTSI_5_92394068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92112901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1641 bp distal
Rchy1	ring finger and CHY zinc finger domain containing 1	1974 bp upstream
Rr125457	regulatory region 125457	901 bp distal
Rr367874	regulatory region 367874	1144 bp downstream
Thap6	THAP domain containing 6	within coordinates
Tssr47275	transcription start site region 47275	1715 bp downstream
Tssr47276	transcription start site region 47276	1683 bp downstream
Tssr51834	transcription start site region 51834	1937 bp upstream
Tssr51835	transcription start site region 51835	1905 bp upstream