rs237074958 SNP Detail

Summary

• ID
  rs237074958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38816172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTCCTCA CTGAGGAGCT GCCCGGCATC
  CCGGAGCTAG AGTCAGCTTA GAGAAAGAGG GGGTCGCGGG CGTTGGCACC GCCCGGGCTC
  AGAAGGCCCC TTACCCACCG TTGCGCGGCG GCGGAGGGAG CGCGGCGGGC GGCTCCAGGA
  M
  CCCCGCCGAG CCCCCGCCGC CTCCCCCTCC GCTAGGTGGC CGTTCGTCCC GCTCCATGCG
  GCGGTGCTCA GGGCCCTCTC GGGCTTCGCT GCTCCGCCAT GACTTGCGCC TTCGTAGTCG
  TCGTCCTGGT CTTCCACGGG GGGAGGGGGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320227504	CHEV_2_38781680	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237074958					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38816172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11616	CpG island 11616	within coordinates
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Rr56789	regulatory region 56789	within coordinates
Rr396935	regulatory region 396935	150 bp upstream
Tssr17567	transcription start site region 17567	663 bp downstream
Tssr23832	transcription start site region 23832	178 bp downstream
Tssr23833	transcription start site region 23833	199 bp downstream
Tssr23834	transcription start site region 23834	236 bp downstream