rs237075414 SNP Detail

Summary

• ID
  rs237075414
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165482986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGCGCT GTTGACTTTG
  CTTCTGCATA CAGAGCTGAT AGGGGCAGCT CTGGTCCTGA TACAGCATAA ACCATCAGGG
  CCACCTACCA TGGAGACTGC TTTCTCATTC TGGATCTCAC TGGTGATCTC TCCCGCAGCA
  TGGTCAGCCC CTGGGCTACA GCTTGGCTCC AGAGGCGCCT CCTCCTTTTG CTTTGTATCC
  S
  GCTCTGCGAT AGTAGTACCT TCTGCTTTTC CAGAAGAGGT TTGTGGGGCT TTCTCCCTGA
  CCACTCCCTC CTCCTCAGGC ATATTTGCGT CTGGGCTTTT CTGTCCGAGC CTATCTTCAT
  CTGCTACCCT CTCCTCAGAG GCTGTCCCTT CAGTGGCCTT CCCAGTGTCT GTATGCTCTC
  CCGGGGTTGT CTCTTCCCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087012	CHEV_1_167585548	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237075414					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165482986 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	Coding-NonSynonymous
Rr372388	regulatory region 372388	915 bp upstream
Rr422410	regulatory region 422410	1357 bp distal
Rr422411	regulatory region 422411	1600 bp distal
Rr422412	regulatory region 422412	8 bp distal
Tssr9810	transcription start site region 9810	1531 bp downstream
Tssr9811	transcription start site region 9811	131 bp downstream
Tssr9812	transcription start site region 9812	93 bp upstream