rs237081166 SNP Detail

Summary

• ID
  rs237081166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCTTAA TCAGGACATG
  GTTGGTGGAT ATGGCCAACC CCCTTGGCAC ATAGCTGTTG GTCATGTGGG CTAGGCCTGG
  GCTTGCTGGT CAAGGCTCTG ACCTCTTCTT TCCCCTAGTT CTTCACCTGC CTTGTGATCC
  TGTTTGCCTG TGAGGTGGCT GCAGGCATCT GGGGCTTCGT AAACAAAGAC CAGGTAAGCC
  K
  AGGTTCACCG AGTGGGAGAT ATGCCCTCTG CCCTCCAACA GATGTGGGTT GCTCTGAGCC
  CATAGTTATA GGGTGCTTTT TGAATTTCTT GGACCTGCTG CTTGGGTGGG GGCAGGGTCT
  TGGGAGCTCA GTGGAAGAGG TGGCATCAGG CTGAGCCCAT CGGGAAGTTG AGTGCTCTTG
  GGCGTAGCCC CGACACTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473968	CHEV_7_150251930	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237081166					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619762 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Tssr70273	transcription start site region 70273	1066 bp downstream
Tssr70274	transcription start site region 70274	1048 bp downstream
Tssr70275	transcription start site region 70275	262 bp downstream
Tssr70276	transcription start site region 70276	231 bp downstream
Tssr70277	transcription start site region 70277	76 bp downstream
Tssr70278	transcription start site region 70278	705 bp upstream
Tssr70279	transcription start site region 70279	1340 bp upstream
Tssr70280	transcription start site region 70280	1376 bp upstream
Tssr70281	transcription start site region 70281	1510 bp upstream