rs237107196 SNP Detail

Summary

• ID
  rs237107196
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104442923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGGGGT CTTTTGAAGA
  CTCTGGTACC ATCATCATCT CCGAATTGAT TCGGAGTGTT GAATTCAATT GCTTTTCTAA
  TTTAAAACCT AGAGCCCAAG TTTGGAGTGC TCATCTGGCT ATCTTTCAGA GGGCTGTCTC
  CCCATTATCC TTATATCCCA GCCTCATCGC TTTTCTCTTC CCTTGGGGAT GGGGGTGGGG
  T
  GGGGGCGGGG GACGGGTCAG AGGCCCCAAC TCCTCAGGGT TTATTTCTTA AACACTCAAT
  TTCTGGCCTG TACATGGAGC AATTTCTAAT TAGACATTTT AGGTAGGGTT TTTAGGTACG
  TGGTTTAGGT AGGAGTTTTT TGAGCTATGT GCAAAAAAAA AAAAAAAAAA AAAAAAAGCT
  GATGCGTCCT TTTCAGAAGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
ss387185478	MGP_WTSI_12_105714874	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	ZALENDE/EiJ
rs237107196					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387185478	MGP_WTSI_12_105714874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104442923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5027	CpG island 5027	1709 bp distal
Cpgi5028	CpG island 5028	289 bp distal
Gscdt	goosecoid homeobox divergent transcript	within coordinates
Rr2050	regulatory region 2050	within coordinates
Rr387727	regulatory region 387727	149 bp downstream
Rr471923	regulatory region 471923	1390 bp distal
Rr471924	regulatory region 471924	223 bp proximal