rs237116430 SNP Detail

Summary

• ID
  rs237116430
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87000016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCATATA TTCAGCAGCC AATCCCCCTG
  CGGCGTTTTG TGTCTTTGTC CAACAGGAAA GTGCGTTTTA TAACGAGGGG CGTTACCCAG
  GCGCCAATGG GCGGGCGCCG ATGGAACGTA CTAGCCAATG AGCGCAAGAC GTTGAGTGAC
  W
  GCTGTCCAAT GGAGGGCCTC AGTGCTAGCA CGGCTTACAG CTTAAGCGCC TCAGCGGTCT
  GAGGAATGTC AACTATTCAA TATGGAGGCG GAGGTCGATA AGCTGGAACT GATGGTGAGT
  GGAGAGTGAA GGAAACCTAC TGGGTAATTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772671	CHEV_11_86922692	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237116430					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87000016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3483	CpG island 3483	within coordinates
Gm73625	predicted gene, 73625	322 bp upstream
Prr11	proline rich 11	482 bp upstream
Rr369312	regulatory region 369312	250 bp downstream
Rr453746	regulatory region 453746	493 bp distal
Rr453747	regulatory region 453747	within coordinates
Rr453748	regulatory region 453748	333 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2	71 bp upstream
Tssr103905	transcription start site region 103905	within coordinates
Tssr103906	transcription start site region 103906	31 bp upstream
Tssr103907	transcription start site region 103907	62 bp upstream
Tssr103908	transcription start site region 103908	370 bp upstream
Tssr109946	transcription start site region 109946	471 bp upstream
Tssr109947	transcription start site region 109947	431 bp upstream
Tssr109948	transcription start site region 109948	407 bp upstream