rs237126693 SNP Detail

Summary

• ID
  rs237126693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGTTTG TTCCGGGGTA
  AATAGACTTC CCACCCAGTG AGTTTCTCTG GCTGGTTTCA TAGACAGTGT CACATTCCCA
  CCGCCTTTCT GACAGCCTGT GTCTGCCTCC CTCCCTTTGT GTGTCTCAGC CATTTGGCTT
  GTGTTTGGAC CCTGGATCCA CTCTACACTA ACTACCTGTA CACCTTCACT TAACCTTCTA
  R
  TGCCTGGGTT CCTCCTCTGT AATGTATATG GAGTCCTCCC CTGCAGCTAG GGGGATCCCA
  TCAGTTCTTA CAAAGTGCTC AAAGCCGTGC TTGGCATATA GGCTGTGTGG ATGGTGCTGG
  CCCTCACTCC TCTGCACTGA CACCCAGAGG GAACAGCTTC TATCTGCCTT TAGATCTGCA
  AATTTCCTCT ATTCCACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190354	MGP_WTSI_6_91710429	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237126693					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190354	MGP_WTSI_6_91710429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737416 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1074 bp downstream
Rr137562	regulatory region 137562	1985 bp proximal
Rr145245	regulatory region 145245	1943 bp proximal
Rr379752	regulatory region 379752	1250 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1372 bp downstream
Tssr57762	transcription start site region 57762	1975 bp downstream
Tssr57763	transcription start site region 57763	1951 bp downstream
Tssr57764	transcription start site region 57764	1927 bp downstream
Tssr57765	transcription start site region 57765	1894 bp downstream
Tssr57766	transcription start site region 57766	1868 bp downstream
Tssr57767	transcription start site region 57767	1797 bp downstream
Tssr57768	transcription start site region 57768	1787 bp downstream
Tssr57769	transcription start site region 57769	1587 bp downstream
Tssr57770	transcription start site region 57770	1476 bp downstream
Tssr62096	transcription start site region 62096	1801 bp upstream
Tssr62097	transcription start site region 62097	1594 bp upstream