rs237131591 SNP Detail

Summary

• ID
  rs237131591
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:84564111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGCCTGG CGAGCACTCT GCAGCTATGT
  CAAACAATGC AACCAAAGAT ACCAGAGAGA TCCGGAAACG CCAGCAAAAG CGGACAAACA
  TTAATTGGAG ATGAAGAGCG GGGATTTAGT CTCCGCAGCG GCGCTTGGAG CGCTGCGACC
  S
  GCTGACACAA GCTCCACCTC ACCCATCCAC CCCAGGGCGC CTTGGTCCCC ACCTCCATTT
  CCCTACCTTC GTTGCTGGGG CTGGCCAAAA GGGTCCGGAG CGCCGCACAC AAGAGAAGGC
  ACGTCCAGAG GGGGCCCTTT AGAGGTGCCG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321595493	CHEV_5_84845277	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237131591					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84564111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16022	CpG island 16022			within coordinates
Cpgi16023	CpG island 16023			630 bp proximal
Epha5	Eph receptor A5			Coding-NonSynonymous
				Intron
Gm42163	predicted gene, 42163			486 bp upstream
Gm71976	predicted gene, 71976			1204 bp upstream
Rr613965	regulatory region 613965			within coordinates
Rr613966	regulatory region 613966			336 bp proximal
Rr613967	regulatory region 613967			544 bp proximal
Rr613968	regulatory region 613968			1197 bp proximal
Rr613969	regulatory region 613969			1215 bp proximal
Tssr51507	transcription start site region 51507			860 bp downstream
Tssr51508	transcription start site region 51508			891 bp downstream
Tssr51509	transcription start site region 51509			1046 bp downstream
Tssr51510	transcription start site region 51510			1072 bp downstream
Tssr51511	transcription start site region 51511			1116 bp downstream
Tssr51512	transcription start site region 51512			1143 bp downstream
Tssr51513	transcription start site region 51513			1226 bp downstream