rs237139534 SNP Detail

Summary

• ID
  rs237139534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:28228108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGCTCCG GGTCGCTGCG
  CCCACCCGAC GCGCCCAGGA GGACTCCGCA GCCCTGCTTT GGATTGTCCC CCAAGGCTTA
  ACCCCGACGC TTCGCTTGAA TTCCTCGGCC GCCTTCGCTC GGGTGGCGAC TTCCTCTCCG
  TGCCCCCTCC CCCTCGCCAT GAAGGTAAGT GTTCTGTGCG CACGGACGCT CCCTACTTTT
  Y
  CCCCCCCTTT TCAAAGTTAA CTGAACTCTT TCAATCTATC CCTATCCTCT CCATTTCTCT
  AACTGCCTGG AGAAAGCTAA ACTCCAATAT CGCCGGCAGG GACTCCTATC TTTTCGTCCC
  TTACCCTGGG GACACTGCCT CTGCGTCCTT GGAGACTTTT TGCACCGGCT ATTCTTCAAA
  CCTTTTCAAC TATGGAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390637212	MGP_WTSI_14_29319337	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237139534					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390637212	MGP_WTSI_14_29319337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:28228108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6258	CpG island 6258			within coordinates
Cpgi6259	CpG island 6259			1441 bp proximal
Gm2670	predicted gene 2670			1923 bp downstream
Rr489628	regulatory region 489628			1391 bp distal
Rr489629	regulatory region 489629			1073 bp distal
Rr489630	regulatory region 489630			883 bp distal
Rr489631	regulatory region 489631			1552 bp proximal
Rr489632	regulatory region 489632			1664 bp proximal
Tssr124778	transcription start site region 124778			1546 bp downstream
Tssr124779	transcription start site region 124779			1495 bp downstream
Tssr124780	transcription start site region 124780			1462 bp downstream
Tssr124781	transcription start site region 124781			1389 bp downstream
Tssr124782	transcription start site region 124782			1325 bp downstream
Tssr124783	transcription start site region 124783			660 bp downstream
Tssr124784	transcription start site region 124784			642 bp downstream
Tssr124785	transcription start site region 124785			582 bp downstream
Tssr124786	transcription start site region 124786			534 bp downstream
Tssr124787	transcription start site region 124787			379 bp downstream
Tssr124788	transcription start site region 124788			354 bp downstream
Tssr124789	transcription start site region 124789			316 bp downstream
Wnt5a	wingless-type MMTV integration site family, member 5A			Intron
				Noncoding-Transcript-Variant