rs237143482 SNP Detail

Summary

• ID
  rs237143482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTGCT TCATCGGTGT
  CACACCTGCC ACAGCAAGGC AAATCACTTT TCATTTGTAG AAAAACTGTT GTAAAAGAAT
  GGGTATCCAA CTCTCCTCTC CCTCTGAAAT ATATCTCCAC TGCTCTCCCG AGTGCAGGCT
  CCTGGCTGTG TGGCCATCAC ATCCCAGAGC CAACCACGGG GCAAAGGGCA GCTTCAGCCC
  Y
  GTAGGCCTCT TCCTCCTCAG CTGAGCCTTT GTGGGGGTGG ACAAGCATGC TCTCCCATGT
  GTCCTGATGT GTACTCACAG CGGGGCATGG TGACAGGCAA GGGGAGATCA AACTACTGCC
  CAGCCTGTCC CCAGGGACCT TGTTCCTAAA GCAAAAAGGC AGATGCATGC ATAGACACTG
  TGAAGCGCTA CACCTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	SPRET/EiJ	ZALENDE/EiJ
ss350399154	MGP_WTSI_1_90156817	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	SPRET/EiJ	ZALENDE/EiJ
rs237143482					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399154	MGP_WTSI_1_90156817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187964 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	964 bp distal
Rr18062	regulatory region 18062	1637 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1117 bp downstream
Tssr7959	transcription start site region 7959	1097 bp downstream
Tssr7960	transcription start site region 7960	1074 bp downstream
Tssr7961	transcription start site region 7961	1045 bp downstream
Tssr7962	transcription start site region 7962	885 bp downstream
Tssr7963	transcription start site region 7963	855 bp downstream
Tssr7964	transcription start site region 7964	828 bp downstream
Tssr7965	transcription start site region 7965	804 bp downstream