rs237145732 SNP Detail

Summary

• ID
  rs237145732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135504581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAACTT TTCCATGGAT
  GTAGTGGGTG CGTGCTTATA AACCCAGGCG GAGCAAGTTA TTGAACTTGC TCAGCTACAT
  GAGACCCAGG TCTTGAAAAA CGAGGGCAGG AGGTGAGGGA GACGAGAGGG GAAGAAGGGA
  GGGGAAGGGG AAGGAGAGGG GAAGAAGAGA GGAGAGCAAA GAGAGGAGAG GAGAGGGGAG
  R
  GGAGGGGAGG GAAGGGGAGG GGAGAGGAGG GGAGGGGAGG GGTTCTAGTT CTGGGGCTGT
  GCTGTGGGTG GTCTGGTTCA TGCTTTGTGG GGTGGTGGTT GGCGTTTAGC CGGACACACA
  TGCTCCAGCT AAGGCTGAGG AAGACTAATC CCTGATAAAG ACAGAACACT GCACCTTAGG
  CAGTGGACCT CATCAGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
ss351544859	MGP_WTSI_1_137473420	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	A	G	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
rs237145732					SNP	G	G	G	G	G	A	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351544859	MGP_WTSI_1_137473420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135504581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1973 bp distal
Rr419194	regulatory region 419194			1187 bp distal
Rr419195	regulatory region 419195			1002 bp proximal
Rr419196	regulatory region 419196			1998 bp proximal