rs237150020 SNP Detail

Summary

• ID
  rs237150020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81252596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGGCTT GGCGGGTTGG
  ACGCTGAGTG TGGCCGGCCA CTGTTCGCCA CCTACTCGGG CCTCTGGAGG AAGTGCTACT
  TTCTGGGCAT CGACCGGGAC ATCGACACCC TCATCCTGAA AGGTGAGCGG CGGGCGCGCC
  CCGCGTCTCT ACGTCCGCGC GCGGAGCTCA GCCCGGGCAT CCCAGGGGCG CGCGGGTCCC
  Y
  GCGGTCGCCT CTCCAGTCGC TGCGCTCCGT TGCCCCGCGC ATTTTTCACC CTTCCAGATT
  GCTTCCCTGC TTTCCTTCCC CAGCTACTCT TCTTTCTCCC TTTCCTTGCT CCTTCATCCT
  ACCCTTCTTT TACCATTTTC CTGGACTCCG TTTTACCCCT CACACTGTCT CTTTATCTTC
  CCTAAGACTC TCTCCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399196563	MGP_WTSI_17_81344507	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237150020					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399196563	MGP_WTSI_17_81344507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81252596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	within coordinates
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	1397 bp proximal
Gm65830	predicted gene, 65830	18 bp upstream
Gm65833	predicted gene, 65833	839 bp downstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates
Tssr145973	transcription start site region 145973	1310 bp downstream
Tssr145974	transcription start site region 145974	1163 bp downstream
Tssr145975	transcription start site region 145975	523 bp downstream
Tssr145976	transcription start site region 145976	496 bp downstream