rs237185857 SNP Detail

Summary

• ID
  rs237185857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGGGAAA TACTTCAGCT
  CTTGTTTGAA AATGCCTGCA AAATTAAGTA GAATTCACAG ATACCTGTCT TGTGACGTTC
  TGCATTTTAA GATTGGAACA GGCTGTCTAG AACATGTCTT CAGCTGTGAT TTTAGAGGTC
  CTCTATAGCT ACTGCAGTGT CTTCAGGGTA ATCCTAATAG TTTCCAGGAC ATGGACTAAA
  Y
  TGCAGTTCCA GACCCTTAAA CAGCTGACTC TTGACAGATG TCTGAGAAAG CCTTTTAAAA
  AATCTGTTTA TAATAGACTG AAAGAAAGCT CAAGAAAGAA CTAATCATAT TTATACACAA
  CCCATGCTCC AATGCCCCAG GCAGGTGTCT GGTTTTTCTC AGTGTTACTT GATGGAAATC
  TTAGATAAAG GCAACATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350554851	MGP_WTSI_1_97209309	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237185857					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350554851	MGP_WTSI_1_97209309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	696 bp proximal
Fam174a	family with sequence similarity 174, member A	896 bp upstream
Rr29863	regulatory region 29863	343 bp proximal
Rr396183	regulatory region 396183	629 bp upstream
Tssr8214	transcription start site region 8214	875 bp upstream
Tssr8215	transcription start site region 8215	946 bp upstream
Tssr8216	transcription start site region 8216	1355 bp upstream
Tssr8217	transcription start site region 8217	1374 bp upstream
Tssr8218	transcription start site region 8218	1392 bp upstream
Tssr8219	transcription start site region 8219	1418 bp upstream
Tssr13058	transcription start site region 13058	1323 bp downstream