rs237196086 SNP Detail

Summary

• ID
  rs237196086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115150223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATAAGT GTTTATCCCC
  CACTTCAGGT GCTAAGTGCG TTTCCTTATT TACCTTGACA ACTCTGTGCA CTAGATATAA
  TCATTATGAG TACAGTAGCA GTAGAAACCC AGGGATGCAC GGTTAAGCAA TTTACCTAAG
  ATCACGGGGC TATGGAAATA AATGGGGGTA GGATATGGAT CCAGACGCCC AAACTCAAGA
  Y
  CACTAGCTTT TTTAGCCTCT GGACAGTCTG ATCAAGACAT GTTAATAGAT AAATTCCTTC
  GAACACATGC AAACTGATTT TTTTTTTTAA GGAGACCAGG GAGATCGCAG ATCCTTCAAT
  GGCCTGGTTT CACTTTCAAT TACATTGTAA CACTTCCACA CTTCCAATGG AACTGTAGAA
  GAAAGCCAGC GTTTTATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484099	CHEV_10_114751374	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237196086					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115150223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	496 bp proximal
Gm10752	predicted gene 10752	1328 bp upstream
Gm67120	predicted gene, 67120	1311 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	1146 bp upstream
Rr402238	regulatory region 402238	1842 bp upstream
Rr439192	regulatory region 439192	1044 bp distal
Rr439193	regulatory region 439193	1250 bp proximal
Rr439194	regulatory region 439194	1263 bp proximal
Rr439195	regulatory region 439195	1322 bp proximal
Rr439196	regulatory region 439196	1488 bp proximal
Tssr95806	transcription start site region 95806	713 bp upstream
Tssr95807	transcription start site region 95807	765 bp upstream
Tssr95808	transcription start site region 95808	1322 bp upstream
Tssr95809	transcription start site region 95809	1354 bp upstream
Tssr99318	transcription start site region 99318	557 bp downstream
Tssr99319	transcription start site region 99319	591 bp downstream
Tssr99320	transcription start site region 99320	1189 bp downstream
Tssr99321	transcription start site region 99321	1228 bp downstream
Tssr99322	transcription start site region 99322	1299 bp downstream