rs237196418 SNP Detail

Summary

• ID
  rs237196418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102525981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAAGGC GAATCCCGCA
  ACCCCGCACA TATAAAGAAA GCCTTTAGCT AGCGCAGCGC AATTGGTTGC TTTTATCCAG
  TCCGCTGTGC TCCTCGGTGT CCTAATTCTT GGCGTAACTG GCTCGAGAAT AGCCGTATCA
  CGCAGAAGCC ATAATGGCGG ACGCGGGCTC TCCACGCCCT GAACACCCAC TCAGTTTAAG
  M
  GCAAAGTCGT TTTTCTAAGC CATAGGTTCA CTCACACAGC ACCAAACGAT CAGCAGCAAC
  AGTACACGCA AATAAGAGGC ATAGATATTC CAGGTAGTGC AATAACTCAC AAAACCATAT
  TTCCATCCAC CAAGCGCCCC GTTGGGCCGT GAAAAAAAAA ATTTAAAGCA GGTATCCACA
  GCCCCGATGG GCAAAAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206075	MGP_WTSI_X_100677714	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237196418					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206075	MGP_WTSI_X_100677714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102525981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	128 bp distal
Gm26992	predicted gene, 26992	670 bp downstream
Gm55587	predicted gene, 55587	1349 bp downstream
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	323 bp upstream
Tssr163949	transcription start site region 163949	1814 bp upstream
Tssr163950	transcription start site region 163950	1730 bp upstream
Tssr163951	transcription start site region 163951	1606 bp upstream
Tssr163952	transcription start site region 163952	1579 bp upstream
Tssr163953	transcription start site region 163953	1440 bp upstream
Tssr163954	transcription start site region 163954	175 bp downstream
Tssr163955	transcription start site region 163955	405 bp downstream
Tssr163956	transcription start site region 163956	457 bp downstream
Tssr163957	transcription start site region 163957	659 bp downstream
Tssr163958	transcription start site region 163958	830 bp downstream
Tssr163959	transcription start site region 163959	868 bp downstream
Xist	inactive X specific transcripts	within coordinates