rs237201333 SNP Detail

Summary

• ID
  rs237201333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCCAGC CAGTAGAAGC CTGCACAGAT
  GTAGAAACTG AGAAGCCAAG GAAATCACTT GGAAGTTTAA ATGTCAGGCT AGGAtgctgc
  tgctgccgct gccgctgctg ctAaggagga ggaggaagag gaggaagaTC ACAACATTGC
  Y
  TATAAAAAGC CTTGTTTGGC TACAAGTCTA CTTGATTTCC CTGAGAGTAA TCACTGTACT
  GGTCAAGTTC TGTTCATTCA TTGGTCAAAG TCACAGATGT GGCTATTACC TGTGGGTCAT
  TTCTCAGCAT GCATGCTGGA TAAGACCTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068343	CHEV_1_154653471	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237201333					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682092 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1182 bp proximal
Tssr9423	transcription start site region 9423	1431 bp upstream
Tssr9424	transcription start site region 9424	1478 bp upstream
Tssr9425	transcription start site region 9425	1486 bp upstream
Tssr9426	transcription start site region 9426	1536 bp upstream
Tssr9427	transcription start site region 9427	1564 bp upstream
Tssr9428	transcription start site region 9428	1577 bp upstream
Tssr9429	transcription start site region 9429	1607 bp upstream
Tssr14234	transcription start site region 14234	1969 bp downstream