rs237203486 SNP Detail

Summary

• ID
  rs237203486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTAACA TACAAGTACG
  CTTAACAGAT GCTATGTATT GATAAGTTAT ATATATGTAT GGGTGCCTAT GTATGAAACA
  GGGGAACAGG CATTGGCTTC CTTAGAACTG GAATTATAGA TGGTTGTGAG GCACCTGATG
  TGGATGCTGG GAATTGAACT CAGGACCTCT GGAAGAGCAG TAAGTGCTCT TAACCACTGC
  R
  CCATCTCTCC AGCTGCCAGG TGTTAGTTAT CGTCATTAAA ATTATATTAT CATTCAGCTA
  ATAAGCTGGC TCTCTAGGTA AAGGTGCATG CTGCCAAGCC TGACGGCCTG AGTTCTCCTC
  CTGGGACCCC TGTAGTGGAG GGAAAGGGCC AACTTCTCAA GCTGCCCTCT GCCCTCCCAC
  ACCCGCGCTG TGGATGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033178	CHEV_15_81856604	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237203486					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr506380	regulatory region 506380			1884 bp distal
Rr506381	regulatory region 506381			1468 bp proximal
Tssr132336	transcription start site region 132336			1851 bp upstream
Tssr132337	transcription start site region 132337			1880 bp upstream
Tssr132338	transcription start site region 132338			1915 bp upstream
Tssr132339	transcription start site region 132339			1937 bp upstream
Tssr135523	transcription start site region 135523			1675 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			Intron
				Noncoding-Transcript-Variant