rs237210297 SNP Detail

Summary

• ID
  rs237210297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105058920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCGTTC ATAGGAGAGT
  GACTTCATCC AAGGTTACTG TGCTGAACAA AAGTGAAAGT GGGAATTAAA ACTTGGGTTT
  GCTTAAAAGC CCAAGTGTTC TAATGAAAAA AAAAAAACAT TTTTTTTTAA CCTCCAATGT
  ATTTGGAGCC ATGTAGAGTT TTTGTTGTTG TTGTTGTTTT TGTTGGTTGT TTTTTTTTTT
  K
  TTTTTTTGTC TTTCTTTGGT CAACTATAAA AACTTTGAGT TCTTAGTCTT AGAAAGTTAC
  ATGTGTGAAG ACCAAACACC CAGGCCAGCA GGCAAGTGAT CACAGGTGAG AGCAGGTAGT
  AGTGGTTTGT GTGAGATGAT TAGAATAGAG GAGACAAGCT AAGTGCAAGG CCCGAGACTC
  AACCCCCAGT ATGAGAGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss362705417	MGP_WTSI_4_104874328	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs237210297					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362705417	MGP_WTSI_4_104874328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105058920 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	within coordinates
Plpp3	phospholipid phosphatase 3	within coordinates
Rr596555	regulatory region 596555	270 bp distal
Rr596556	regulatory region 596556	1528 bp proximal