rs237215906 SNP Detail

Summary

• ID
  rs237215906
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33597870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCATGT AAAAATTGAT
  CTTTTCCTAG TAAAGTAATA GCTAGAAATG TTGCAACAAA CTGGTCGCGT TGCCAGGACA
  GCAGGGTATC ATACTATGGT AACTGTCAGA GATTTCTTAG TGAAGATTAG TTCCTAATTA
  AATTGCCTTG CCAAGTACGG GAGGGGGAAG AGACAGAAGG GAAGAGACGC GGGGGCGGGG
  C
  GGGGGGGGGC GGTAGGTGTC ACTGGATAAA GGTTCCCAAT GTCTTCTAAA TTTGCTATGT
  ACATTTTACC CCTAGTCATT AAAAGCAATG TTTTCCATTT TAACAAAGAA AAGACACATT
  TACAAAACTC AATTTTAAGC CGTATATTTA TAGAATGTTT TTTTTTTTTT TTTGAGTCAA
  GCACTGGATA CAGAAATAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cJ	C57BL/6J	C57BR/cdJ	CE/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
ss400215656	MGP_WTSI_18_33624471	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cJ	C57BL/6J	C57BR/cdJ	CE/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
rs237215906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400215656	MGP_WTSI_18_33624471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33597870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	317 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	788 bp upstream
Rr352671	regulatory region 352671	within coordinates
Tssr152761	transcription start site region 152761	1374 bp upstream
Tssr152762	transcription start site region 152762	1344 bp upstream
Tssr152763	transcription start site region 152763	1187 bp upstream
Tssr152764	transcription start site region 152764	1159 bp upstream
Tssr152765	transcription start site region 152765	1015 bp upstream
Tssr152766	transcription start site region 152766	961 bp upstream
Tssr152767	transcription start site region 152767	913 bp upstream
Tssr152768	transcription start site region 152768	753 bp upstream
Tssr152769	transcription start site region 152769	431 bp upstream