rs237226238 SNP Detail

Summary

• ID
  rs237226238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83533174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGGGGGC GCGCGGCCGC
  ATCTCCTGCT CCGGCTCTTA GGGCGCTGGG CGGCCACTGG GCCGAGGGCG TGGCTGGCTC
  TGTGGCGGCC GCGCGGAGTC AGTCGGGCGG GAGGCTGCAA CGCAGGGTGC TGGGCGGCCG
  CGCCTTCCCG CCTGGCGGTT CAGAGTGCGC GGCCCGGCGC CGCGGCGGCA CGCCCTCCCC
  K
  CCTGAATGGC CTGCGGCCGG CGACCGGCTG TCGTGGAGAT TCCATCTGTG TTTCCCCGCA
  GAGCCCGCGG GCCCCGCGCA TCCGACGCCC CAGGGTGGTC GGCTCAGAAG GTGAGCGCGG
  CGTCGCGGAG GCCGACCCGG GCCCGGACTC CTGCCATGTT TGTCAACCAG CAACTTCCGA
  GCGACCTCCG AGCAACTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372126303	MGP_WTSI_7_91032476	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237226238					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126303	MGP_WTSI_7_91032476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83533174 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	945 bp upstream
Cpgi19376	CpG island 19376	within coordinates
Mesd	mesoderm development LRP chaperone	within coordinates
Rr168144	regulatory region 168144	within coordinates
Rr400419	regulatory region 400419	310 bp upstream
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr2320	transcription start site region 2320	1746 bp downstream
Tssr67581	transcription start site region 67581	321 bp downstream
Tssr67582	transcription start site region 67582	298 bp downstream
Tssr67583	transcription start site region 67583	226 bp downstream
Tssr67584	transcription start site region 67584	85 bp downstream
Tssr73402	transcription start site region 73402	496 bp upstream
Tssr73403	transcription start site region 73403	396 bp upstream
Tssr73404	transcription start site region 73404	136 bp upstream
Tssr73405	transcription start site region 73405	188 bp downstream
Tssr73406	transcription start site region 73406	247 bp downstream
Tssr73407	transcription start site region 73407	296 bp downstream
Tssr73408	transcription start site region 73408	323 bp downstream
Tssr73409	transcription start site region 73409	358 bp downstream