rs237240689 SNP Detail

Summary

• ID
  rs237240689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34586843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACTGCCA TTAGAGGAGA
  CTCAGAGAGA ACTAAGAGGA AGGGCTAATG TTTCTGACAA ATACATATCA TGTAAGGATA
  CAAGCCTTGT TGGCTGAGGG AAGGCTGATG TTATTAGCTA CTGTGGAAGC TAAGAAAAAA
  GACAGTCTTC CCTACCCTCA ACTCCACGGG TAACAAGGGT TAGCAAGGTT CAGGTTGGAA
  W
  CACAGGGGAT GACAATCATG CACCTCCAAC TACATTAGCT TACTCCTTCC CATAGAATGG
  GCCTCTGAGA AGATCAGTAT TAGTTCTGAG TGTGGTTGAC CAGAAAACTG ACATGTGTAG
  AACATTAATG GCAAGCCTGA ACAAGAGACT TTGATGTGTT TTCTGTTTGG CTGAATATAG
  AGCTACCAAT CAAAGCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402327825	MGP_WTSI_19_34683933	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	T	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	T	T	T	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237240689					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	T	T	A	A	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	T	T	T	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402327825	MGP_WTSI_19_34683933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34586843 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	within coordinates
Rr405932	regulatory region 405932	1630 bp downstream
Rr546756	regulatory region 546756	1463 bp distal
Rr546757	regulatory region 546757	1197 bp distal
Rr546758	regulatory region 546758	1130 bp proximal
Tssr156136	transcription start site region 156136	1907 bp downstream
Tssr156137	transcription start site region 156137	1507 bp downstream