rs237242081 SNP Detail

Summary

• ID
  rs237242081
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGCC CCGCCACCGG
  CGCCTTGGGG CAACGGCCGT CGAGCAGCTG GTGCTGGCCG CCCGAGCCGG GAGGGCGACT
  CTCGCCGGGC GGGGATGGTG GACGAGCCGG TGGGGACTCG CCCGAGCGCG GCCGCCACTC
  GGCCGGGCGC TGCCCGCCAG GGGGCGACGC AACGCGGGGT CCGCAGCCGG CGACCCGCAG
  S
  GAAGAGGCGG CGGGGGCAGT AGGGGAGCCG GTCGGGCACT CACGGAACTC CGTCGGCCCC
  CAGAGTCTCC CGAGTCCACC ATCCGAGGAG TTCGCAAACG AGCGCCCCAC CTTTGCTATG
  TTGCCCTTTG GAGACAAAAC GAGGTACTTC CTTCAACATC CCGCTGGCCA CTTTGTCTGG
  GGAAGGGCTG CGGGGGTTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508373	MGP_WTSI_3_122433431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237242081					SNP	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508373	MGP_WTSI_3_122433431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Tssr31509	transcription start site region 31509	1518 bp downstream
Tssr31510	transcription start site region 31510	1498 bp downstream
Tssr31511	transcription start site region 31511	1379 bp downstream
Tssr31512	transcription start site region 31512	1331 bp downstream
Tssr31513	transcription start site region 31513	1280 bp downstream
Tssr31514	transcription start site region 31514	778 bp downstream
Tssr31515	transcription start site region 31515	644 bp downstream
Tssr31516	transcription start site region 31516	619 bp downstream
Tssr31517	transcription start site region 31517	584 bp downstream
Tssr31518	transcription start site region 31518	456 bp downstream
Tssr31519	transcription start site region 31519	394 bp downstream
Tssr31520	transcription start site region 31520	360 bp downstream
Tssr31521	transcription start site region 31521	274 bp downstream
Tssr31522	transcription start site region 31522	252 bp downstream