rs237244468 SNP Detail

Summary

• ID
  rs237244468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16349776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGAGGA AGGACAGGCC
  CTGCATTGCA GCCCTAGTCT CCCAAGTCAG CATCGGGCAA ATGACAGCAA ACCACATGTC
  ACTTTGGGTG CTTGCAGGGG GAATGGTGAT GTAAGAGGGC TCCCCTCTAA CTCTGTATTC
  CTCTGGGAGC CCTCCGGAAG GATGGATTGT GAAAGACAGG CTTTCCCGGC GCCTCACAGA
  R
  TGTGGAATGC CTGAAGGAAG CACGTGTTTC CGATCCAGCC TTGCACTTCT TTCCAGGCTT
  TTCATCTGTA AAGTGGGATA ACAATACTGA ACTCCAAAGG GTCGCTTGGA GAATCGAATG
  AGGTATAATA GGCCCTATGG CCACGATTCA TGGTGGGAAT CCTCGAACTA CTAGAACCCA
  GTAAAATATG GGCGATCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695752	MGP_WTSI_7_17201200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237244468					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695752	MGP_WTSI_7_17201200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16349776 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	463 bp upstream
Cpgi18383	CpG island 18383	69 bp distal
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	500 bp upstream
Rr400125	regulatory region 400125	175 bp downstream
Rr642707	regulatory region 642707	869 bp distal
Rr642708	regulatory region 642708	368 bp distal
Rr642709	regulatory region 642709	742 bp distal
Rr642710	regulatory region 642710	1285 bp proximal
Rr642711	regulatory region 642711	1393 bp proximal
Tssr64615	transcription start site region 64615	231 bp downstream
Tssr70753	transcription start site region 70753	1245 bp upstream
Tssr70754	transcription start site region 70754	1228 bp upstream
Tssr70755	transcription start site region 70755	1140 bp upstream
Tssr70756	transcription start site region 70756	1063 bp upstream
Tssr70757	transcription start site region 70757	1046 bp upstream
Tssr70758	transcription start site region 70758	991 bp upstream
Tssr70759	transcription start site region 70759	960 bp upstream
Tssr70760	transcription start site region 70760	830 bp upstream
Tssr70761	transcription start site region 70761	784 bp upstream
Tssr70762	transcription start site region 70762	713 bp upstream
Tssr70763	transcription start site region 70763	575 bp upstream