rs237272171 SNP Detail

Summary

• ID
  rs237272171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139735782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCATAA GGCAAAGGTA
  TAAAAACCTA ACCCAAGAGG TTTGAGGACC CAGAGGGAAA CTTAAAATAG TAACAAGGTA
  TAAAAACCTA ACCCAAGAGG TTTGAGAACC CAGAGGGAAA TTTACAACAG TAACAAGGTA
  TAAAAACCTA ACCTAAGAGG TTTGAGAATC CAGAGGGAAA CTTACAACAG TAACACACAC
  R
  CACACACACA CACACACACA CACACACACA CACACACACA CACTCACACA TACACATTCA
  CACATACACT CACACACACT CATACACACA CACATACTCA CACACACACT CACATACACA
  CACACTCACA CATACACTCA TACACACACA CTCACACACA CACACACACT CACACATACA
  CATTCACACA TACACTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322470178	CHEV_7_147341768	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237272171					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139735782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19900	CpG island 19900	1038 bp distal
Rr657729	regulatory region 657729	502 bp distal
Rr657730	regulatory region 657730	959 bp proximal
Rr657731	regulatory region 657731	1179 bp proximal
Sprn	shadow of prion protein	1210 bp upstream
Tssr75508	transcription start site region 75508	1171 bp upstream
Tssr75509	transcription start site region 75509	1124 bp upstream