rs237280156 SNP Detail

Summary

• ID
  rs237280156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTTTGG GTTGGCATAA
  GGATTAGATG CCTGAGGAGG GCCCAATAAG GAGGGACACA GGGCCTTATA GGTGACTCAG
  TCAAGGTCGC AGACTGGTTG GTGTTCTGCC TAAGGTCTAC TGTGCGGCTG ATAATCACAG
  CACAAGCTGC TGAGCTCTCA CCTGGTAGCC CTTCCATTTC ATCACGGGCC CTATGATCGA
  Y
  CAGCTTTCAT ACTCTCCTCT GCTTCTGAAA CCACACGACT AATTCTGGTT GGGGATCTGC
  TACACTTCCC GTTCCACATT CTTGAATGAA TGTCCTTATC TCTTACCACT GTAGTCAGTT
  CTTCATTGTA CTGCCTTGAA ACGGGCCTCG TTAATATACT TCATTCAGAC TACATCTGTG
  GAAGAAACTG GCAGACTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401710838	MGP_WTSI_19_9027621	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237280156					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401710838	MGP_WTSI_19_9027621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	329 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	836 bp downstream
Rr359578	regulatory region 359578	1495 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	435 bp upstream
Tssr154900	transcription start site region 154900	1046 bp downstream
Tssr154901	transcription start site region 154901	695 bp upstream
Tssr154902	transcription start site region 154902	730 bp upstream
Tssr154903	transcription start site region 154903	755 bp upstream
Tssr154904	transcription start site region 154904	846 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	716 bp upstream