rs237289236 SNP Detail

Summary

• ID
  rs237289236
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15540231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAAGAAG GTGGACTTCA
  GAAAATCAAA TAACCCCATT AAAAAATGGG GCTCAGAACT GAACAAAGAA TTCTCACCTG
  AGGAATACCG AATGGCAGAG AAGCACTTGA AAAAATGTTC AACATCCTTA ATCATCAGGG
  AAATGCAAAT CAATACAAGT CATATATATT ATATATGTAT GTGTATATAT TTATATGACA
  T
  AATACAGACA ATAGAGAAAT CACACAGATA CATGTACTAT ATACAAGTCA CACATATAAA
  AATATATGTG TATATATGAC ATAGAAAGCA CACATGATAT AGAAATCAAC ACACTGATAC
  ATGTACTGAT ATATATGTAT ATATATATCA GTATATACAC ATATATATGT ATATATCAGT
  ACATGTATCA TATATATATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss376737739	MGP_WTSI_9_15433379	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs237289236					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737739	MGP_WTSI_9_15433379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15540231 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	715 bp distal
Deup1	deuterosome assembly protein 1	1002 bp upstream
Rr674358	regulatory region 674358	1043 bp distal
Rr674359	regulatory region 674359	990 bp distal
Rr674360	regulatory region 674360	606 bp distal
Tssr83870	transcription start site region 83870	965 bp downstream
Tssr88249	transcription start site region 88249	1101 bp upstream
Tssr88250	transcription start site region 88250	1084 bp upstream
Tssr88251	transcription start site region 88251	1051 bp upstream
Tssr88252	transcription start site region 88252	1028 bp upstream
Tssr88253	transcription start site region 88253	1013 bp upstream
Tssr88254	transcription start site region 88254	624 bp upstream
Tssr88255	transcription start site region 88255	594 bp upstream