rs237303911 SNP Detail

Summary

• ID
  rs237303911
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74560036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCGGGTG GATGAAAGAA
  GGGGGTTGGG GAAGAAACAA ATGGTCTAAT ATTTTCTTCT GGGGAAAGAA AACCAAACCT
  GTATGCCCTG GGCCATCAGA TAATGTCTGA ATTTCCTACT TCAACTAGAT TCCAAATGCT
  CCAACTATCC CCAAAAGCAG CCTTTTATAG GATTCTGTGT ATGGCCAGTG TGTGTGTGTG
  T
  GTGGGGGGGG GGGTGCTGTG CAGTAGGGAG AGAGTGTGTA GGTAAGGAAG TCTTATTTTT
  AAAAAGAAAC TAATAGACTC TAGAAGCCCA CAGAAGTTGA TCTTAAAGGG ATTTCCCTTG
  AAGTCTTTTT TTTTTTTTGA AGAGACATTA ATTAGAAGCA GAAATTGTAA GCTCTGAAAG
  TTTTCAGGCC TACTTCAATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485347	MGP_WTSI_2_74567749	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237303911					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485347	MGP_WTSI_2_74567749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74560036 () rs orientation: forward

Symbol	Name	Function Class
AI448005	expressed sequence AI448005	1644 bp proximal
Cpgi11806	CpG island 11806	1854 bp distal
Gm28230	predicted gene 28230	within coordinates
Hoxd3	homeobox D3	within coordinates
Hoxd4	homeobox D4	532 bp downstream
Igs15	intergenic site 15	within coordinates
Rr57048	regulatory region 57048	within coordinates
Rr57049	regulatory region 57049	364 bp proximal
Rr373366	regulatory region 373366	901 bp upstream
Tssr18441	transcription start site region 18441	137 bp upstream