rs237313975 SNP Detail

Summary

• ID
  rs237313975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTACT TCTATCTTTC
  TTTTCTAATT AGTCAAAGCC TCTCCCATCA TCCCTTCCCA GGAAAGCCAA GGTAGGGGTC
  AGGGTGCTGA TTGGAACCAC CCAGCGACTG GTCAGCAATT GGCCGGCCCT CCAATCTCCA
  AATCATCACT TTGGACGCGC CTGCCCAAGT CAATGATTCC ACATTCAGGA GAACCCAGAG
  R
  GGCAAGGCCA GAGTTCCACA ATTCACACAC AACCCTAGAC CTAGGTGCAT TTCCTTCTCC
  ACATGGCTTC ACATTGCTTG ACCCTGCCTG AGATAATTGC CCACCTCTCC TCCGAGTTCC
  TCAGCTCCGC CTCGGACTTG TCTATGCACA GCCTTTTCTC TCAAAATCCA TATCCTTTCC
  TTAAGACTAG GGTGGAGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535806	CHEV_10_128181521	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237313975					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	242 bp distal
Dgka	diacylglycerol kinase, alpha	within coordinates
Gm31504	predicted gene, 31504	482 bp upstream
Gm66065	predicted gene, 66065	1504 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	910 bp downstream
Rr402364	regulatory region 402364	184 bp upstream
Tssr96440	transcription start site region 96440	328 bp upstream
Tssr96441	transcription start site region 96441	472 bp upstream
Tssr96442	transcription start site region 96442	728 bp upstream
Tssr96443	transcription start site region 96443	1992 bp upstream
Tssr99940	transcription start site region 99940	1746 bp upstream
Tssr99941	transcription start site region 99941	620 bp upstream
Tssr99942	transcription start site region 99942	555 bp upstream
Tssr99943	transcription start site region 99943	493 bp upstream
Tssr99944	transcription start site region 99944	470 bp upstream
Tssr99945	transcription start site region 99945	380 bp upstream
Tssr99946	transcription start site region 99946	356 bp upstream
Tssr99947	transcription start site region 99947	213 bp upstream
Tssr99948	transcription start site region 99948	183 bp upstream
Tssr99949	transcription start site region 99949	381 bp downstream
Tssr99950	transcription start site region 99950	581 bp downstream
Tssr99951	transcription start site region 99951	604 bp downstream
Tssr99952	transcription start site region 99952	617 bp downstream
Tssr99953	transcription start site region 99953	622 bp downstream
Tssr99954	transcription start site region 99954	980 bp downstream
Tssr99955	transcription start site region 99955	1013 bp downstream
Tssr99956	transcription start site region 99956	1768 bp downstream
Tssr99957	transcription start site region 99957	1835 bp downstream