rs237314828 SNP Detail

Summary

• ID
  rs237314828
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114394191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGCCAT CTGGGTGGTG
  CCCCAGGCGG TTCTGAGGGT GAAACTTTAA GGCTCTCAGA AGAAAGACTT GGAAAGGCTG
  CTCTCAGAAC TTTTTTTTTT TAATGCTACT TAAGATGGGT GTGGTGGTGT ACCCATTATA
  ATTCAGCAAG CAAGAGGCTA GGGCAGAACT ACACTGTGAG ACCCTCTGTC AAATTAACTC
  K
  CGAGTAAAAT ACATAAACAA ATGCCATCAA GCTGTGTATA AAATTTCACT CTGTAGATTA
  TACTTTGAAA GGAAAAAGAC TGCACGCTGG ACCCTCACAC GTTCAAGATC TGGGCTACAT
  GAAACCTCTC AAGAAAGTGA TGAAAGAACT GGAAAGGTTA GCTCTGCAGT CCATCAAGAG
  GAGAGTTCAA TTCTCAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379005660	MGP_WTSI_9_114474241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237314828					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379005660	MGP_WTSI_9_114474241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114394191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22424	CpG island 22424	538 bp distal
Rr383952	regulatory region 383952	within coordinates
Rr687644	regulatory region 687644	264 bp distal
Trim71	tripartite motif-containing 71	754 bp upstream
Tssr91844	transcription start site region 91844	1870 bp upstream
Tssr91845	transcription start site region 91845	1840 bp upstream
Tssr91846	transcription start site region 91846	1820 bp upstream
Tssr91847	transcription start site region 91847	1020 bp upstream
Tssr91848	transcription start site region 91848	914 bp upstream
Tssr91849	transcription start site region 91849	828 bp upstream
Tssr91850	transcription start site region 91850	789 bp upstream
Tssr91851	transcription start site region 91851	774 bp upstream