rs237323749 SNP Detail

Summary

• ID
  rs237323749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42152948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGACGGC GGGGCGGGTC
  CCCGCCCAGG GGGAGGGCTG GGGCGGGGGC CGGGAGGGCT GCTGTGCGTG CGTGTGGGAG
  TGCGCGTGTG TGCGCCCTCG CGCCTGCGCG GGGCTGCGGG AATGGGGGCG GGCGCGCGCG
  GGTCGGGACT CGGCCGGCTC CGCAGCCCTC CCGGTTGGGG TCCCGCGCTC TCCTGGGGAC
  Y
  TCAGCGGCCA CGCTGGCCCG GGACGGGAGG CCAGGTCAGA CAACACACCA CTGCGCGCCG
  CCCCGCGCTC TCAGCCTTGG GCCCTGCGTT TGGCTCGTGG GCCCGTGGCC TGCCCGTGGG
  TGCGTGGGGT CGGAGCCCGC CCCAGTATCG GGTTCCTTAT TAGAACCTGA CACCAGGGAA
  CACCCGGGTT AAGCCGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380164395	MGP_WTSI_10_41996758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237323749					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164395	MGP_WTSI_10_41996758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42152948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	257 bp upstream
Gm56983	predicted gene, 56983	within coordinates
Gm66047	predicted gene, 66047	within coordinates
Rr401852	regulatory region 401852	608 bp upstream
Rr430524	regulatory region 430524	74 bp distal
Rr430525	regulatory region 430525	within coordinates
Rr430526	regulatory region 430526	761 bp proximal
Tssr93079	transcription start site region 93079	52 bp downstream
Tssr97433	transcription start site region 97433	1300 bp upstream
Tssr97434	transcription start site region 97434	296 bp upstream
Tssr97435	transcription start site region 97435	271 bp upstream
Tssr97436	transcription start site region 97436	209 bp upstream
Tssr97437	transcription start site region 97437	189 bp upstream
Tssr97438	transcription start site region 97438	648 bp downstream
Tssr97439	transcription start site region 97439	683 bp downstream