rs237330033 SNP Detail

Summary

• ID
  rs237330033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60959421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAAATC TCCAAATAAG
  GCTCGAAGTC CTTCTAGAAA TATAAGAAGA AAAACAGAAA CATTACATTC AGAGAAAGGA
  AGTCTGCTCT TGGTTTGTTC AATTCTCATT TTTCAAGGGC AAAGCTGTTA CTCAAGATGA
  GGGCTCCACC TCAGCAATAA TCTTATCATC TTCTACAGCC CTCAAAGTTT ATACACCAGT
  Y
  GCTCCCTTAC AACAGTGTGG ACTTTGATAC AAAGTTGATC TGCTTATTTT GTAAAATAAG
  AGGACTAATC TAGATGAATT CCCAGTGAGC CATCACCTTT ATCTCACTGC TGGTATTCCC
  AGCAGTTCCT CTCTGTAACC AGTCCTCAAA ATGAGTGCCA TTTTTTTCTC TACTCTCTTT
  GAATTTCCCC CTTCTCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327703	CHEV_10_60586390	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237330033					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60959421 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1495 bp downstream
Rr228136	regulatory region 228136	1221 bp distal
Rr401931	regulatory region 401931	1507 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates