rs237353028 SNP Detail

Summary

• ID
  rs237353028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCACACA AGTCTAGTGT
  GATCCCGCAC CTCACTGACC CATATCTGTC TCCGTTCCAC TCCCTCCTGC AAGGTGGTCT
  GACAAGTTGG AGGAAAACTT CCCAGGAGAC CCGCCCCTCT GGCTGGTGCC AGCCTTTTCC
  TTCTCCTGGC ATGAGGTTCC TGGGAAATTC CAGTTCCCAG GACCAAACCG ATTGTCTCAG
  Y
  CGTCAGGCAA AAGACACATG TGTTTTGTCT CATGAGGGTG TCTTTGACCC TGTTAGGACA
  AGTAGGGGAC CGTATAAGTT TTAGATGGCA TCCCTATCCA GGTGGTCTCC TCTGGGGCAG
  CATATTTTCT ACATAGCCTC TATCCTCAGA ATTGGCCTTT TGAAAGCCCT CGTCCCTCAT
  CCCTTATACT AGCTCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481840	MGP_WTSI_2_28556348	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237353028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481840	MGP_WTSI_2_28556348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590840 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	452 bp distal
Gm75616	predicted gene, 75616	669 bp downstream
Spaca9	sperm acrosome associated 9	1177 bp upstream
Tssr16968	transcription start site region 16968	1965 bp downstream
Tssr16969	transcription start site region 16969	1010 bp downstream
Tssr16970	transcription start site region 16970	674 bp downstream
Tssr16971	transcription start site region 16971	641 bp downstream
Tssr16972	transcription start site region 16972	1839 bp upstream
Tssr23291	transcription start site region 23291	1169 bp upstream
Tssr23292	transcription start site region 23292	1140 bp upstream
Tssr23293	transcription start site region 23293	1089 bp upstream