rs237358905 SNP Detail

Summary

• ID
  rs237358905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58275640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTGCAT GTGTACCAGA
  ACAAGTTCTG CTCCGCATCG AATTGCACCG AGAACAGCAC GGAGGTGGCC TTCACTGTCC
  ATCTATTTGA TGACCAAAGA TACCATTTTG CAAGCCAGTG CTGCCAAGGA GAGTCCTGCA
  ATGCCACCCA CTCTGGTTTG TACAGGGCCC AGCAGCCTGT CCTGGGCCAC ACCCTCACAC
  Y
  CCACTCTTGC TTTTCTGCTT GCTTTGCTTG GCTAGGGGTA GATGTCTCCA GTCCAGGCAC
  TTCTGCACCC AGTTGGATAA CGTTAGCATC TGACTTATAG CAGTTACATA AGAAACATGG
  GGGATGTTAA AGCAGGTCAA ACACCCTGCT TTCTCTTCGG TGAAGACAGG GATTTCATGG
  GCCATTCTTG TGGCAAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690035	CHEV_11_58198316	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237358905					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58275640 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101733	transcription start site region 101733	2000 bp downstream
Tssr101734	transcription start site region 101734	1968 bp downstream
Tssr101735	transcription start site region 101735	194 bp downstream
Tssr101736	transcription start site region 101736	126 bp downstream
Tssr101737	transcription start site region 101737	86 bp downstream
Tssr101738	transcription start site region 101738	68 bp downstream
Tssr101739	transcription start site region 101739	1909 bp upstream
Tssr101740	transcription start site region 101740	1973 bp upstream
Tssr108157	transcription start site region 108157	1956 bp downstream