rs237361666 SNP Detail

Summary

• ID
  rs237361666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGAGC CACCATCCCA
  CAGCTCTACA GGAGGTTTTT TTTTTTTTGT TTTGTTTTTT GTTTTTTGAG AGTATCAGCA
  TGTAGGCCAA ATGGCTAAAA CTCAAGATCC TCTGGCCTCT CCTGCTGAAT GCTGAGATTA
  TGAGCTCGGG CAACTATGCC TGCCTGAAAC ATGGCATTCA CATGAGTGGA AAGAATAAAT
  K
  ATCAAACTTA AAGCTTTTTA AAATATTCAC AAGATTTATA AAACCATATT TCTTTACCTT
  TATTCGTTTG GGGGGACATG GGGACAGTGT CTCACTGTGT AGTCCTAGCT GCCTAGAACT
  TCTAATGTAG ATCAGGCTGG CCCTGAGCTC ATAGAAATCT TCCTGCCTCT GATTCCAGAG
  TGCTGACTTT AAAGACATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322451432	CHEV_7_134476008	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237361666					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931666 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	Intron
Tssr69200	transcription start site region 69200	132 bp downstream
Tssr69201	transcription start site region 69201	1076 bp upstream
Tssr69202	transcription start site region 69202	1108 bp upstream
Tssr69203	transcription start site region 69203	1156 bp upstream
Tssr69204	transcription start site region 69204	1287 bp upstream